c2v.seurat.read

c2v.seurat.read(path, qs=False, assays=None, use_slots=['counts', 'data'], graphs=True, dimreds=True)

Reads .rds-file or .qsave-file with Seurat object and returns AnnData or MuData object.

Parameters:

path str | os.PathLike

Path to the file.

qs bool, optional

Whether to use qs package to read the file. Default is False.

assays str | list[str] | None, optional

Assays to process. If None, all assays are processed.

use_slots Literal["counts", "data"] | list[Literal["counts", "data"]], optional

Slots to use for counts. Can be “counts” or “data”. Default is [“counts”, “data”].

graphs bool, optional

Whether to process graphs. Default is True.

dimreds bool, optional

Whether to process dimensionality reductions. Default is True.

Return type:

mudata.MuData

Returns:

mudata.MuData MuData object.