c2v.utils.get_connectivity_matrix

c2v.utils.get_connectivity_matrix(adata, uns_key='group_connectivity')

Get group connectivity matrix from adata.uns[uns_key].

Parameters:

adata sc.AnnData

AnnData object with group connectivity matrix in adata.uns[uns_key].

uns_key str, optional

Key in adata.uns to group connectivity matrix. Default is “group_connectivity”.

Return type:

DataFrame

Returns:

pd.DataFrame Group connectivity matrix.