c2v.tl.align#
- c2v.tl.align(clones, use_rep='clone2vec', adj_rep='clone2vec_pa', uns_key='simple_mnn', weighted=True)#
Align clones.obsm[use_rep] using MNNs found in clones.uns[uns_key] via procrustes alignment (PA).
- Parameters:
- clones AnnData
Annotated data matrix at the clone level.
- use_rep str, optional
Key in clones.obsm containing representation to use for alignment, by default “clone2vec”.
- adj_rep str, optional
Key in clones.obsm to store aligned representation, by default “clone2vec_pa”.
- uns_key str, optional
Key in clones.uns containing anchor information, by default “simple_mnn”.
- weighted bool
- Return type:
- Returns:
None Aligned representation is stored in clones.obsm[adj_rep].